J3_9G8M_006
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACC*GAGGGAGCGAGACCCGUCGCCG*CACGGGGU
- Length
- 33 nucleotides
- Bulged bases
- 9G8M|1|L5|G|961, 9G8M|1|L5|A|964, 9G8M|1|L5|G|965, 9G8M|1|L5|A|966, 9G8M|1|L5|G|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9G8M|1|L5|A|711
9G8M|1|L5|C|712
9G8M|1|L5|C|713
*
9G8M|1|L5|G|955
9G8M|1|L5|A|956
9G8M|1|L5|G|957
9G8M|1|L5|G|958
9G8M|1|L5|G|959
9G8M|1|L5|A|960
9G8M|1|L5|G|961
9G8M|1|L5|C|962
9G8M|1|L5|G|963
9G8M|1|L5|A|964
9G8M|1|L5|G|965
9G8M|1|L5|A|966
9G8M|1|L5|C|967
9G8M|1|L5|C|968
9G8M|1|L5|C|969
9G8M|1|L5|G|970
9G8M|1|L5|U|971
9G8M|1|L5|C|972
9G8M|1|L5|G|973
9G8M|1|L5|C|974
9G8M|1|L5|C|975
9G8M|1|L5|G|976
*
9G8M|1|L5|C|1278
9G8M|1|L5|A|1279
9G8M|1|L5|C|1280
9G8M|1|L5|G|1281
9G8M|1|L5|G|1282
9G8M|1|L5|G|1283
9G8M|1|L5|G|1284
9G8M|1|L5|U|1285
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LF
- Large ribosomal subunit protein uL30
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
- Chain Lr
- 60S ribosomal protein L28
Coloring options: