J3_9G8M_013
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGGACG*CUCGGCCGAU
- Length
- 31 nucleotides
- Bulged bases
- 9G8M|1|L5|C|2468, 9G8M|1|L5|A|2470, 9G8M|1|L5|G|2473, 9G8M|1|L5|G|2501, 9G8M|1|L5|C|2502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9G8M|1|L5|A|2449
9G8M|1|L5|G|2450
9G8M|1|L5|A|2451
9G8M|1|L5|U|2452
9G8M|1|L5|G|2453
9G8M|1|L5|G|2454
*
9G8M|1|L5|C|2463
9G8M|1|L5|G|2464
9G8M|1|L5|U|2465
9G8M|1|L5|U|2466
9G8M|1|L5|C|2467
9G8M|1|L5|C|2468
9G8M|1|L5|G|2469
9G8M|1|L5|A|2470
9G8M|1|L5|A|2471
9G8M|1|L5|G|2472
9G8M|1|L5|G|2473
9G8M|1|L5|G|2474
9G8M|1|L5|A|2475
9G8M|1|L5|C|2476
9G8M|1|L5|G|2477
*
9G8M|1|L5|C|2497
9G8M|1|L5|U|2498
9G8M|1|L5|C|2499
9G8M|1|L5|G|2500
9G8M|1|L5|G|2501
9G8M|1|L5|C|2502
9G8M|1|L5|C|2503
9G8M|1|L5|G|2504
9G8M|1|L5|A|2505
9G8M|1|L5|U|2506
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
Coloring options: