J3_9G8M_014

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGAUGG*CCAGU*AGGGUGUAAAUCUC

Length

27 nucleotides

Bulged bases

9G8M|1|L5|U|2765, 9G8M|1|L5|C|2766, 9G8M|1|L5|U|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|2547
9G8M|1|L5|G|2548
9G8M|1|L5|A|2549
9G8M|1|L5|G|2550
9G8M|1|L5|A|2551
9G8M|1|L5|U|2552
9G8M|1|L5|G|2553
9G8M|1|L5|G|2554
*
9G8M|1|L5|C|2569
9G8M|1|L5|C|2570
9G8M|1|L5|A|2571
9G8M|1|L5|G|2572
9G8M|1|L5|U|2573
*
9G8M|1|L5|A|2755
9G8M|1|L5|G|2756
9G8M|1|L5|G|2757
9G8M|1|L5|G|2758
9G8M|1|L5|U|2759
9G8M|1|L5|G|2760
9G8M|1|L5|U|2761
9G8M|1|L5|A|2762
9G8M|1|L5|A|2763
9G8M|1|L5|A|2764
9G8M|1|L5|U|2765
9G8M|1|L5|C|2766
9G8M|1|L5|U|2767
9G8M|1|L5|C|2768

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34