J3_9G8M_017

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CGGGAGUAACUAUGACUCUCUUAAGGUAG*UGAAUG

Length

38 nucleotides

Bulged bases

9G8M|1|L5|A|3758, 9G8M|1|L5|A|3764, 9G8M|1|L5|U|3816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|C|3694
9G8M|1|L5|U|3695
9G8M|1|L5|G|3696
*
9G8M|1|L5|C|3750
9G8M|1|L5|G|3751
9G8M|1|L5|G|3752
9G8M|1|L5|G|3753
9G8M|1|L5|A|3754
9G8M|1|L5|G|3755
9G8M|1|L5|U|3756
9G8M|1|L5|A|3757
9G8M|1|L5|A|3758
9G8M|1|L5|C|3759
9G8M|1|L5|U|3760
9G8M|1|L5|A|3761
9G8M|1|L5|U|3762
9G8M|1|L5|G|3763
9G8M|1|L5|A|3764
9G8M|1|L5|C|3765
9G8M|1|L5|U|3766
9G8M|1|L5|C|3767
9G8M|1|L5|U|3768
9G8M|1|L5|C|3769
9G8M|1|L5|U|3770
9G8M|1|L5|U|3771
9G8M|1|L5|A|3772
9G8M|1|L5|A|3773
9G8M|1|L5|G|3774
9G8M|1|L5|G|3775
9G8M|1|L5|U|3776
9G8M|1|L5|A|3777
9G8M|1|L5|G|3778
*
9G8M|1|L5|U|3812
9G8M|1|L5|G|3813
9G8M|1|L5|A|3814
9G8M|1|L5|A|3815
9G8M|1|L5|U|3816
9G8M|1|L5|G|3817

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain X

Cripavirus internal ribosome entry site (IRES); CrPV IRES