J3_9G8M_019
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9G8M|1|L5|C|4335, 9G8M|1|L5|U|4372
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G8M_019 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.1053
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9G8M|1|L5|G|4226
9G8M|1|L5|U|4227
9G8M|1|L5|C|4228
*
9G8M|1|L5|G|4329
9G8M|1|L5|C|4330
9G8M|1|L5|C|4331
9G8M|1|L5|U|4332
9G8M|1|L5|C|4333
9G8M|1|L5|A|4334
9G8M|1|L5|C|4335
9G8M|1|L5|G|4336
9G8M|1|L5|A|4337
9G8M|1|L5|U|4338
9G8M|1|L5|C|4339
9G8M|1|L5|C|4340
*
9G8M|1|L5|G|4368
9G8M|1|L5|G|4369
9G8M|1|L5|U|4370
9G8M|1|L5|G|4371
9G8M|1|L5|U|4372
9G8M|1|L5|C|4373
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: