J3_9G8M_022

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGGUUG*CCUUCG*CGCACGCCGUUCGUGG

Length

29 nucleotides

Bulged bases

9G8M|1|L5|C|4881, 9G8M|1|L5|G|4934, 9G8M|1|L5|C|4935, 9G8M|1|L5|A|4936, 9G8M|1|L5|C|4937, 9G8M|1|L5|C|4942, 9G8M|1|L5|G|4943, 9G8M|1|L5|G|4949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|U|4746
9G8M|1|L5|C|4747
9G8M|1|L5|G|4748
9G8M|1|L5|G|4749
9G8M|1|L5|U|4750
9G8M|1|L5|U|4751
9G8M|1|L5|G|4752
*
9G8M|1|L5|C|4877
9G8M|1|L5|C|4878
9G8M|1|L5|U|4879
9G8M|1|L5|U|4880
9G8M|1|L5|C|4881
9G8M|1|L5|G|4882
*
9G8M|1|L5|C|4933
9G8M|1|L5|G|4934
9G8M|1|L5|C|4935
9G8M|1|L5|A|4936
9G8M|1|L5|C|4937
9G8M|1|L5|G|4939
9G8M|1|L5|C|4940
9G8M|1|L5|C|4942
9G8M|1|L5|G|4943
9G8M|1|L5|U|4944
9G8M|1|L5|U|4945
9G8M|1|L5|C|4946
9G8M|1|L5|G|4947
9G8M|1|L5|U|4948
9G8M|1|L5|G|4949
9G8M|1|L5|G|4950

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a