J3_9G8M_023

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9G8M|1|L5|U|4987, 9G8M|1|L5|C|4988, 9G8M|1|L5|A|5059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|C|4968
9G8M|1|L5|A|4969
9G8M|1|L5|U|4970
*
9G8M|1|L5|G|4984
9G8M|1|L5|C|4985
9G8M|1|L5|U|4986
9G8M|1|L5|U|4987
9G8M|1|L5|C|4988
9G8M|1|L5|U|4989
*
9G8M|1|L5|A|5058
9G8M|1|L5|A|5059
9G8M|1|L5|G|5060
9G8M|1|L5|G|5061

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17