J3_9G8M_040

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9G8M|1|L5|A|1534, 9G8M|1|L5|G|1641, 9G8M|1|L5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G8M_040 not in the Motif Atlas

Homologous match to J3_8CRE_009

Geometric discrepancy: 0.1149

The information below is about J3_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9G8M|1|L5|U|1531
9G8M|1|L5|G|1532
9G8M|1|L5|A|1533
9G8M|1|L5|A|1534
9G8M|1|L5|C|1535
9G8M|1|L5|U|1536
9G8M|1|L5|A|1537
*
9G8M|1|L5|U|1622
9G8M|1|L5|A|1623
9G8M|1|L5|G|1624
*
9G8M|1|L5|C|1640
9G8M|1|L5|G|1641
9G8M|1|L5|A|1642
9G8M|1|L5|A|1643

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37