J3_9GFT_001
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GFT_001 not in the Motif Atlas
- Geometric match to J3_5J7L_001
- Geometric discrepancy: 0.0996
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9GFT|1|0|G|46
9GFT|1|0|C|47
*
9GFT|1|0|G|361
9GFT|1|0|G|362
9GFT|1|0|A|363
9GFT|1|0|A|364
9GFT|1|0|U|365
9GFT|1|0|A|366
9GFT|1|0|U|367
*
9GFT|1|0|A|393
9GFT|1|0|G|394
9GFT|1|0|C|395
Current chains
- Chain 0
- 16S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS12
- Chain I
- Small ribosomal subunit protein bS16
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