J3_9GFT_010

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

9GFT|1|0|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GFT_010 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1481

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

9GFT|1|0|C|990
9GFT|1|0|U|991
9GFT|1|0|U|992
9GFT|1|0|G|993
*
9GFT|1|0|C|1045
9GFT|1|0|A|1046
9GFT|1|0|G|1047
*
9GFT|1|0|C|1210
9GFT|1|0|U|1211
9GFT|1|0|U|1212
9GFT|1|0|A|1213
9GFT|1|0|C|1214
9GFT|1|0|G|1215

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS14