J3_9GFT_012

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGU*AAUGUGC*GGAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GFT|1|0|G|1003
9GFT|1|0|A|1004
9GFT|1|0|A|1005
9GFT|1|0|G|1006
9GFT|1|0|U|1007
*
9GFT|1|0|A|1021
9GFT|1|0|A|1022
9GFT|1|0|U|1023
9GFT|1|0|G|1024
9GFT|1|0|U|1025
9GFT|1|0|G|1026
9GFT|1|0|C|1027
*
9GFT|1|0|G|1033
9GFT|1|0|G|1034
9GFT|1|0|A|1035
9GFT|1|0|A|1036
9GFT|1|0|C|1037

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein uS3

Chain B

ATP-dependent RNA helicase HrpA

Chain G

Small ribosomal subunit protein uS14