J3_9GFT_031
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 9GFT|1|AA|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GFT_031 not in the Motif Atlas
- Geometric match to J3_5J7L_010
- Geometric discrepancy: 0.2398
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9GFT|1|AA|U|1116
9GFT|1|AA|A|1117
9GFT|1|AA|U|1118
*
9GFT|1|AA|A|1155
9GFT|1|AA|G|1156
9GFT|1|AA|A|1157
9GFT|1|AA|C|1158
*
9GFT|1|AA|G|1181
9GFT|1|AA|G|1182
9GFT|1|AA|U|1183
9GFT|1|AA|G|1184
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AB
- Small ribosomal subunit protein uS2
- Chain AG
- Small ribosomal subunit protein uS7
- Chain AI
- Small ribosomal subunit protein uS9
- Chain AJ
- Small ribosomal subunit protein uS10
- Chain AM
- Small ribosomal subunit protein uS14
- Chain B
- ATP-dependent RNA helicase HrpA
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