J3_9GFT_039

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GFT_039 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1098

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9GFT|1|AV|C|698
9GFT|1|AV|A|699
9GFT|1|AV|G|700
*
9GFT|1|AV|C|732
9GFT|1|AV|G|733
9GFT|1|AV|A|734
9GFT|1|AV|A|735
9GFT|1|AV|C|736
*
9GFT|1|AV|G|760
9GFT|1|AV|A|761
9GFT|1|AV|U|762
9GFT|1|AV|G|763

Current chains

Chain AV

23S RNA

Nearby chains

Chain AX

Large ribosomal subunit protein uL2