J3_9GFT_043

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GFT_043 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.2009

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9GFT|1|AV|U|1344
9GFT|1|AV|C|1345
9GFT|1|AV|G|1346
9GFT|1|AV|A|1347
9GFT|1|AV|C|1348
9GFT|1|AV|C|1349
*
9GFT|1|AV|G|1382
9GFT|1|AV|A|1383
9GFT|1|AV|A|1384
9GFT|1|AV|A|1385
*
9GFT|1|AV|U|1402
9GFT|1|AV|A|1403

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ao

Large ribosomal subunit protein uL23