J3_9GFT_046
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9GFT|1|AV|A|2388, 9GFT|1|AV|U|2390, 9GFT|1|AV|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GFT_046 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1099
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9GFT|1|AV|G|2282
9GFT|1|AV|C|2283
9GFT|1|AV|A|2284
*
9GFT|1|AV|U|2384
9GFT|1|AV|C|2385
9GFT|1|AV|A|2386
9GFT|1|AV|U|2387
9GFT|1|AV|A|2388
9GFT|1|AV|G|2389
9GFT|1|AV|U|2390
9GFT|1|AV|G|2391
9GFT|1|AV|A|2392
9GFT|1|AV|U|2393
9GFT|1|AV|C|2394
9GFT|1|AV|C|2395
*
9GFT|1|AV|G|2421
9GFT|1|AV|C|2422
9GFT|1|AV|U|2423
9GFT|1|AV|C|2424
9GFT|1|AV|A|2425
9GFT|1|AV|A|2426
9GFT|1|AV|C|2427
Current chains
- Chain AV
- 23S RNA
Nearby chains
- Chain Ag
- Large ribosomal subunit protein uL15
- Chain Ar
- Large ribosomal subunit protein bL27
- Chain Aw
- Large ribosomal subunit protein bL33
- Chain Ay
- Large ribosomal subunit protein bL35
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