J3_9GFT_051
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9GFT|1|AW|G|13, 9GFT|1|AW|A|108
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GFT_051 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.2419
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9GFT|1|AW|G|10
9GFT|1|AW|C|11
9GFT|1|AW|C|12
9GFT|1|AW|G|13
9GFT|1|AW|U|14
9GFT|1|AW|A|15
9GFT|1|AW|G|16
*
9GFT|1|AW|C|68
9GFT|1|AW|G|69
9GFT|1|AW|C|70
*
9GFT|1|AW|G|106
9GFT|1|AW|G|107
9GFT|1|AW|A|108
9GFT|1|AW|A|109
9GFT|1|AW|C|110
Current chains
- Chain AW
- 5S ribosomal RNA
Nearby chains
- Chain AV
- Large subunit ribosomal RNA; LSU rRNA
- Chain Aj
- Large ribosomal subunit protein uL18
- Chain Aq
- Large ribosomal subunit protein bL25
- Chain Ar
- Large ribosomal subunit protein bL27
Coloring options: