J3_9GFT_055
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9GFT|1|N|U|72, 9GFT|1|N|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GFT_055 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.1105
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9GFT|1|N|A|56
9GFT|1|N|C|57
*
9GFT|1|N|G|70
9GFT|1|N|A|71
9GFT|1|N|U|72
9GFT|1|N|A|73
9GFT|1|N|A|74
9GFT|1|N|G|75
9GFT|1|N|C|76
*
9GFT|1|N|G|110
9GFT|1|N|A|111
9GFT|1|N|U|112
9GFT|1|N|U|113
9GFT|1|N|U|114
Current chains
- Chain N
- 23S RNA
Nearby chains
- Chain g
- Large ribosomal subunit protein uL23
- Chain l
- Large ribosomal subunit protein uL29
- Chain p
- Large ribosomal subunit protein bL34
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