J3_9GFT_067

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9GFT|1|N|A|2518, 9GFT|1|N|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GFT_067 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0873

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9GFT|1|N|C|2517
9GFT|1|N|A|2518
9GFT|1|N|U|2519
9GFT|1|N|C|2520
*
9GFT|1|N|G|2545
9GFT|1|N|U|2546
9GFT|1|N|A|2547
*
9GFT|1|N|U|2561
9GFT|1|N|U|2562
9GFT|1|N|U|2563
9GFT|1|N|A|2564
9GFT|1|N|A|2565
9GFT|1|N|A|2566
9GFT|1|N|G|2567

Current chains

Chain N

23S RNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain X

Large ribosomal subunit protein uL14