J3_9GGR_009
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9GGR|1|0|A|975, 9GGR|1|0|G|976, 9GGR|1|0|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GGR_009 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1016
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9GGR|1|0|U|955
9GGR|1|0|U|956
9GGR|1|0|U|957
9GGR|1|0|A|958
9GGR|1|0|A|959
9GGR|1|0|U|960
9GGR|1|0|U|961
9GGR|1|0|C|962
*
9GGR|1|0|G|973
9GGR|1|0|A|974
9GGR|1|0|A|975
9GGR|1|0|G|976
9GGR|1|0|A|977
9GGR|1|0|A|978
9GGR|1|0|C|979
9GGR|1|0|C|980
9GGR|1|0|U|981
9GGR|1|0|U|982
9GGR|1|0|A|983
9GGR|1|0|C|984
*
9GGR|1|0|G|1221
9GGR|1|0|G|1222
9GGR|1|0|C|1223
9GGR|1|0|U|1224
9GGR|1|0|A|1225
Current chains
- Chain 0
- 16S ribosomal RNA
Nearby chains
- Chain 9
- Small ribosomal subunit protein uS10
- Chain A
- Transfer RNA; tRNA
- Chain F
- Small ribosomal subunit protein uS13
- Chain G
- Small ribosomal subunit protein uS14
- Chain t
- Small ribosomal subunit protein uS19
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