J3_9GGR_031

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GGR_031 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1255

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9GGR|1|AA|U|1073
9GGR|1|AA|G|1074
*
9GGR|1|AA|U|1083
9GGR|1|AA|G|1084
9GGR|1|AA|U|1085
9GGR|1|AA|U|1086
*
9GGR|1|AA|G|1099
9GGR|1|AA|C|1100
9GGR|1|AA|A|1101
9GGR|1|AA|A|1102

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A1

Small ribosomal subunit protein bS21

Chain AB

Small ribosomal subunit protein uS2

Chain AE

Small ribosomal subunit protein uS5