J3_9GGR_036

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

9GGR|1|AV|A|504, 9GGR|1|AV|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GGR_036 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.1241

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9GGR|1|AV|G|30
9GGR|1|AV|C|31
*
9GGR|1|AV|G|474
9GGR|1|AV|C|475
9GGR|1|AV|G|476
9GGR|1|AV|A|477
9GGR|1|AV|A|478
9GGR|1|AV|A|479
9GGR|1|AV|A|480
9GGR|1|AV|G|481
9GGR|1|AV|A|482
9GGR|1|AV|A|483
9GGR|1|AV|C|484
*
9GGR|1|AV|G|496
9GGR|1|AV|A|497
9GGR|1|AV|G|498
9GGR|1|AV|U|499
9GGR|1|AV|G|500
9GGR|1|AV|A|501
9GGR|1|AV|A|502
9GGR|1|AV|A|503
9GGR|1|AV|A|504
9GGR|1|AV|A|505
9GGR|1|AV|G|506
9GGR|1|AV|A|507
9GGR|1|AV|A|508
9GGR|1|AV|C|509
9GGR|1|AV|C|510

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Al

Large ribosomal subunit protein bL20

Chain An

Large ribosomal subunit protein uL22

Chain Ap

Large ribosomal subunit protein uL24