J3_9GGR_065

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9GGR|1|N|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GGR_065 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0965

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9GGR|1|N|C|2091
9GGR|1|N|U|2092
9GGR|1|N|G|2093
*
9GGR|1|N|C|2196
9GGR|1|N|U|2197
9GGR|1|N|A|2198
9GGR|1|N|A|2199
9GGR|1|N|C|2200
*
9GGR|1|N|G|2223
9GGR|1|N|G|2224
9GGR|1|N|A|2225
9GGR|1|N|C|2226
9GGR|1|N|A|2227
9GGR|1|N|G|2228

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL2

Chain U

Large ribosomal subunit protein bL9

Chain k

Large ribosomal subunit protein bL28