3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
9GHA|1|a|U|34, 9GHA|1|a|U|448, 9GHA|1|a|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHA_020 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.05
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

9GHA|1|a|C|32
9GHA|1|a|C|33
9GHA|1|a|U|34
9GHA|1|a|G|35
*
9GHA|1|a|C|445
9GHA|1|a|G|446
9GHA|1|a|A|447
9GHA|1|a|U|448
9GHA|1|a|A|449
9GHA|1|a|G|450
9GHA|1|a|U|451
9GHA|1|a|G|452
9GHA|1|a|A|453
9GHA|1|a|A|454
9GHA|1|a|C|455
9GHA|1|a|C|456
9GHA|1|a|A|457
9GHA|1|a|G|458
9GHA|1|a|U|459
9GHA|1|a|A|460
9GHA|1|a|C|461
*
9GHA|1|a|G|468
9GHA|1|a|G|469
9GHA|1|a|A|470
9GHA|1|a|A|471
9GHA|1|a|A|472
9GHA|1|a|G|473

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain e
50S ribosomal protein L4
Chain p
50S ribosomal protein L20
Chain s
50S ribosomal protein L23

Coloring options:


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