J3_9GHA_027

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9GHA|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHA_027 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1104

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9GHA|1|a|C|1306
9GHA|1|a|A|1307
9GHA|1|a|A|1308
9GHA|1|a|G|1309
*
9GHA|1|a|C|1605
9GHA|1|a|C|1606
9GHA|1|a|C|1607
9GHA|1|a|A|1608
9GHA|1|a|A|1609
9GHA|1|a|A|1610
9GHA|1|a|C|1611
*
9GHA|1|a|G|1620
9GHA|1|a|U|1621
9GHA|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34