J3_9GHB_025

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHB_025 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1782

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

9GHB|1|a|G|1055
9GHB|1|a|G|1056
9GHB|1|a|A|1057
*
9GHB|1|a|U|1081
9GHB|1|a|U|1082
9GHB|1|a|U|1083
9GHB|1|a|A|1084
9GHB|1|a|A|1085
9GHB|1|a|A|1086
9GHB|1|a|G|1087
*
9GHB|1|a|C|1102
9GHB|1|a|A|1103
9GHB|1|a|C|1104

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36