J3_9GHC_027

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9GHC|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHC_027 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1179

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9GHC|1|a|C|1306
9GHC|1|a|A|1307
9GHC|1|a|A|1308
9GHC|1|a|G|1309
*
9GHC|1|a|C|1605
9GHC|1|a|C|1606
9GHC|1|a|C|1607
9GHC|1|a|A|1608
9GHC|1|a|A|1609
9GHC|1|a|A|1610
9GHC|1|a|C|1611
*
9GHC|1|a|G|1620
9GHC|1|a|U|1621
9GHC|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34