3D structure

PDB id
9GHD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
9GHD|1|a|U|34, 9GHD|1|a|U|448, 9GHD|1|a|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHD_020 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0426
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

9GHD|1|a|C|32
9GHD|1|a|C|33
9GHD|1|a|U|34
9GHD|1|a|G|35
*
9GHD|1|a|C|445
9GHD|1|a|G|446
9GHD|1|a|A|447
9GHD|1|a|U|448
9GHD|1|a|A|449
9GHD|1|a|G|450
9GHD|1|a|U|451
9GHD|1|a|G|452
9GHD|1|a|A|453
9GHD|1|a|A|454
9GHD|1|a|C|455
9GHD|1|a|C|456
9GHD|1|a|A|457
9GHD|1|a|G|458
9GHD|1|a|U|459
9GHD|1|a|A|460
9GHD|1|a|C|461
*
9GHD|1|a|G|468
9GHD|1|a|G|469
9GHD|1|a|A|470
9GHD|1|a|A|471
9GHD|1|a|A|472
9GHD|1|a|G|473

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain e
50S ribosomal protein L4
Chain p
50S ribosomal protein L20
Chain s
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1169 s