J3_9GHD_027
3D structure
- PDB id
- 9GHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.41 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 9GHD|1|a|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GHD_027 not in the Motif Atlas
- Homologous match to J3_9DFE_011
- Geometric discrepancy: 0.1165
- The information below is about J3_9DFE_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_71677.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9GHD|1|a|C|1306
9GHD|1|a|A|1307
9GHD|1|a|A|1308
9GHD|1|a|G|1309
*
9GHD|1|a|C|1605
9GHD|1|a|C|1606
9GHD|1|a|C|1607
9GHD|1|a|A|1608
9GHD|1|a|A|1609
9GHD|1|a|A|1610
9GHD|1|a|C|1611
*
9GHD|1|a|G|1620
9GHD|1|a|U|1621
9GHD|1|a|G|1622
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
Coloring options: