3D structure

PDB id
9GHD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
9GHD|1|a|U|2833, 9GHD|1|a|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHD_036 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1172
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

9GHD|1|a|G|2812
9GHD|1|a|A|2813
9GHD|1|a|A|2814
9GHD|1|a|C|2815
*
9GHD|1|a|G|2831
9GHD|1|a|U|2832
9GHD|1|a|U|2833
9GHD|1|a|G|2834
9GHD|1|a|A|2835
9GHD|1|a|U|2836
*
9GHD|1|a|A|2882
9GHD|1|a|A|2883
9GHD|1|a|U|2884
9GHD|1|a|G|2885
9GHD|1|a|A|2886
9GHD|1|a|A|2887
9GHD|1|a|C|2888

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain m
50S ribosomal protein L17
Chain z
50S ribosomal protein L32

Coloring options:


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