J3_9GHE_027

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9GHE|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHE_027 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1128

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9GHE|1|a|C|1306
9GHE|1|a|A|1307
9GHE|1|a|A|1308
9GHE|1|a|G|1309
*
9GHE|1|a|C|1605
9GHE|1|a|C|1606
9GHE|1|a|C|1607
9GHE|1|a|A|1608
9GHE|1|a|A|1609
9GHE|1|a|A|1610
9GHE|1|a|C|1611
*
9GHE|1|a|G|1620
9GHE|1|a|U|1621
9GHE|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34