3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHF_013 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.0804
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

9GHF|1|A|C|1063
9GHF|1|A|G|1064
9GHF|1|A|U|1065
9GHF|1|A|C|1066
9GHF|1|A|A|1067
9GHF|1|A|G|1068
*
9GHF|1|A|C|1107
9GHF|1|A|G|1108
9GHF|1|A|C|1109
9GHF|1|A|A|1110
9GHF|1|A|A|1111
9GHF|1|A|C|1112
9GHF|1|A|C|1113
*
9GHF|1|A|G|1187
9GHF|1|A|A|1188
9GHF|1|A|U|1189
9GHF|1|A|G|1190
9GHF|1|A|A|1191
9GHF|1|A|C|1192
9GHF|1|A|G|1193

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain C
30S ribosomal protein S3
Chain E
30S ribosomal protein S5
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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