3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
9GHF|1|A|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHF_016 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.1086
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

9GHF|1|A|U|1116
9GHF|1|A|A|1117
9GHF|1|A|U|1118
*
9GHF|1|A|A|1155
9GHF|1|A|G|1156
9GHF|1|A|A|1157
9GHF|1|A|C|1158
9GHF|1|A|U|1159
9GHF|1|A|G|1160
9GHF|1|A|C|1161
*
9GHF|1|A|G|1175
9GHF|1|A|A|1176
9GHF|1|A|G|1177
9GHF|1|A|G|1178
9GHF|1|A|A|1179
9GHF|1|A|A|1180
9GHF|1|A|G|1181
9GHF|1|A|G|1182
9GHF|1|A|U|1183
9GHF|1|A|G|1184

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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