3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
9GHF|1|A|U|1240, 9GHF|1|A|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHF_017 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1404
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

9GHF|1|A|C|1237
9GHF|1|A|A|1238
9GHF|1|A|A|1239
9GHF|1|A|U|1240
9GHF|1|A|G|1241
*
9GHF|1|A|C|1296
9GHF|1|A|G|1297
9GHF|1|A|U|1298
9GHF|1|A|A|1299
9GHF|1|A|G|1300
9GHF|1|A|U|1301
9GHF|1|A|C|1302
9GHF|1|A|C|1303
*
9GHF|1|A|G|1334
9GHF|1|A|U|1335
9GHF|1|A|C|1336
9GHF|1|A|G|1337

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13

Coloring options:


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