J3_9GHF_020

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9GHF|1|a|U|34, 9GHF|1|a|U|448, 9GHF|1|a|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHF_020 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.043

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9GHF|1|a|C|32
9GHF|1|a|C|33
9GHF|1|a|U|34
9GHF|1|a|G|35
*
9GHF|1|a|C|445
9GHF|1|a|G|446
9GHF|1|a|A|447
9GHF|1|a|U|448
9GHF|1|a|A|449
9GHF|1|a|G|450
9GHF|1|a|U|451
9GHF|1|a|G|452
9GHF|1|a|A|453
9GHF|1|a|A|454
9GHF|1|a|C|455
9GHF|1|a|C|456
9GHF|1|a|A|457
9GHF|1|a|G|458
9GHF|1|a|U|459
9GHF|1|a|A|460
9GHF|1|a|C|461
*
9GHF|1|a|G|468
9GHF|1|a|G|469
9GHF|1|a|A|470
9GHF|1|a|A|471
9GHF|1|a|A|472
9GHF|1|a|G|473

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain e

50S ribosomal protein L4

Chain p

50S ribosomal protein L20

Chain s

50S ribosomal protein L23