J3_9GHF_027

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9GHF|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHF_027 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1157

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9GHF|1|a|C|1306
9GHF|1|a|A|1307
9GHF|1|a|A|1308
9GHF|1|a|G|1309
*
9GHF|1|a|C|1605
9GHF|1|a|C|1606
9GHF|1|a|C|1607
9GHF|1|a|A|1608
9GHF|1|a|A|1609
9GHF|1|a|A|1610
9GHF|1|a|C|1611
*
9GHF|1|a|G|1620
9GHF|1|a|U|1621
9GHF|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34