3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
9GHF|1|a|U|2833, 9GHF|1|a|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHF_036 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1159
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

9GHF|1|a|G|2812
9GHF|1|a|A|2813
9GHF|1|a|A|2814
9GHF|1|a|C|2815
*
9GHF|1|a|G|2831
9GHF|1|a|U|2832
9GHF|1|a|U|2833
9GHF|1|a|G|2834
9GHF|1|a|A|2835
9GHF|1|a|U|2836
*
9GHF|1|a|A|2882
9GHF|1|a|A|2883
9GHF|1|a|U|2884
9GHF|1|a|G|2885
9GHF|1|a|A|2886
9GHF|1|a|A|2887
9GHF|1|a|C|2888

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain m
50S ribosomal protein L17
Chain z
50S ribosomal protein L32

Coloring options:


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