J3_9GHG_011

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

9GHG|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHG_011 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0782

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

9GHG|1|A|C|1342
9GHG|1|A|U|1343
9GHG|1|A|A|1344
9GHG|1|A|A|1345
9GHG|1|A|G|1346
*
9GHG|1|A|C|1649
9GHG|1|A|G|1650
9GHG|1|A|C|1651
9GHG|1|A|A|1652
9GHG|1|A|A|1653
9GHG|1|A|A|1654
9GHG|1|A|C|1655
*
9GHG|1|A|G|1664
9GHG|1|A|U|1665
9GHG|1|A|A|1666
9GHG|1|A|G|1667

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34