J3_9GHG_013

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHG_013 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0743

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9GHG|1|A|G|1468
9GHG|1|A|G|1469
9GHG|1|A|G|1470
9GHG|1|A|A|1471
9GHG|1|A|C|1472
9GHG|1|A|G|1473
*
9GHG|1|A|C|1611
9GHG|1|A|C|1612
*
9GHG|1|A|G|1615
9GHG|1|A|A|1616
9GHG|1|A|A|1617
9GHG|1|A|A|1618
9GHG|1|A|A|1619
9GHG|1|A|G|1620
9GHG|1|A|C|1621

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2