J3_9GHG_017
3D structure
- PDB id
- 9GHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9GHG|1|A|A|2545, 9GHG|1|A|U|2546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GHG_017 not in the Motif Atlas
- Homologous match to J3_4WF9_009
- Geometric discrepancy: 0.076
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9GHG|1|A|C|2544
9GHG|1|A|A|2545
9GHG|1|A|U|2546
9GHG|1|A|C|2547
*
9GHG|1|A|G|2572
9GHG|1|A|U|2573
9GHG|1|A|U|2574
*
9GHG|1|A|A|2588
9GHG|1|A|U|2589
9GHG|1|A|U|2590
9GHG|1|A|A|2591
9GHG|1|A|A|2592
9GHG|1|A|A|2593
9GHG|1|A|G|2594
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain N
- 50S ribosomal protein L14
Coloring options: