J3_9GHG_032
3D structure
- PDB id
- 9GHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GHG_032 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.0945
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9GHG|1|a|C|1074
9GHG|1|a|G|1075
9GHG|1|a|U|1076
9GHG|1|a|C|1077
9GHG|1|a|A|1078
9GHG|1|a|G|1079
*
9GHG|1|a|C|1118
9GHG|1|a|G|1119
9GHG|1|a|C|1120
9GHG|1|a|A|1121
9GHG|1|a|A|1122
9GHG|1|a|C|1123
9GHG|1|a|C|1124
*
9GHG|1|a|G|1197
9GHG|1|a|A|1198
9GHG|1|a|U|1199
9GHG|1|a|G|1200
9GHG|1|a|A|1201
9GHG|1|a|C|1202
9GHG|1|a|G|1203
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain d
- 30S ribosomal protein S3
- Chain f
- 30S ribosomal protein S5
- Chain h
- 30S ribosomal protein S7
- Chain j
- 30S ribosomal protein S9
- Chain k
- Small ribosomal subunit protein uS10
- Chain o
- 30S ribosomal protein S14 type Z
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