3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GC*GUGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHH_001 not in the Motif Atlas
Geometric match to J3_4WF9_010
Geometric discrepancy: 0.0875
The information below is about J3_4WF9_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60031.2
Basepair signature
cWW-cWW-cWW-tWH-tSH-F-F
Number of instances in this motif group
7

Unit IDs

9GHH|1|A|G|30
9GHH|1|A|C|31
*
9GHH|1|A|G|520
9GHH|1|A|U|521
9GHH|1|A|G|522
9GHH|1|A|A|523
9GHH|1|A|A|524
9GHH|1|A|A|525
9GHH|1|A|A|526
9GHH|1|A|G|527
*
9GHH|1|A|C|554
9GHH|1|A|C|555

Current chains

Chain A
23S rRNA

Nearby chains

Chain T
50S ribosomal protein L20
Chain X
50S ribosomal protein L24

Coloring options:


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