J3_9GHH_008

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHH_008 not in the Motif Atlas

Homologous match to J3_9DFE_008

Geometric discrepancy: 0.0672

The information below is about J3_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9GHH|1|A|C|743
9GHH|1|A|A|744
9GHH|1|A|G|745
*
9GHH|1|A|C|777
9GHH|1|A|G|778
9GHH|1|A|A|779
9GHH|1|A|A|780
9GHH|1|A|C|781
*
9GHH|1|A|G|805
9GHH|1|A|A|806
9GHH|1|A|U|807
9GHH|1|A|G|808

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2