J3_9GHH_010

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

9GHH|1|A|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHH_010 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1013

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GHH|1|A|C|1335
9GHH|1|A|G|1336
9GHH|1|A|A|1337
9GHH|1|A|U|1338
9GHH|1|A|U|1339
9GHH|1|A|G|1340
*
9GHH|1|A|C|1669
9GHH|1|A|A|1670
9GHH|1|A|A|1671
*
9GHH|1|A|U|1683
9GHH|1|A|A|1684
9GHH|1|A|A|1685
9GHH|1|A|G|1686

Current chains

Chain A

23S rRNA

Nearby chains