3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UUG*CUAACC*GAGACAG
Length
16 nucleotides
Bulged bases
9GHH|1|A|A|2225
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHH_014 not in the Motif Atlas
Homologous match to J3_4WF9_007
Geometric discrepancy: 0.1441
The information below is about J3_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07703.1
Basepair signature
cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

9GHH|1|A|U|2118
9GHH|1|A|U|2119
9GHH|1|A|G|2120
*
9GHH|1|A|C|2223
9GHH|1|A|U|2224
9GHH|1|A|A|2225
9GHH|1|A|A|2226
9GHH|1|A|C|2227
9GHH|1|A|C|2228
*
9GHH|1|A|G|2249
9GHH|1|A|A|2250
9GHH|1|A|G|2251
9GHH|1|A|A|2252
9GHH|1|A|C|2253
9GHH|1|A|A|2254
9GHH|1|A|G|2255

Current chains

Chain A
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L28
Chain G
50S ribosomal protein L2

Coloring options:


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