J3_9GHH_029
3D structure
- PDB id
- 9GHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9GHH|1|a|A|984, 9GHH|1|a|G|985, 9GHH|1|a|A|987
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GHH_029 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0726
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9GHH|1|a|U|964
9GHH|1|a|U|965
9GHH|1|a|U|966
9GHH|1|a|A|967
9GHH|1|a|A|968
9GHH|1|a|U|969
9GHH|1|a|U|970
9GHH|1|a|C|971
*
9GHH|1|a|G|982
9GHH|1|a|A|983
9GHH|1|a|A|984
9GHH|1|a|G|985
9GHH|1|a|A|986
9GHH|1|a|A|987
9GHH|1|a|C|988
9GHH|1|a|C|989
9GHH|1|a|U|990
9GHH|1|a|U|991
9GHH|1|a|A|992
9GHH|1|a|C|993
*
9GHH|1|a|G|1231
9GHH|1|a|G|1232
9GHH|1|a|C|1233
9GHH|1|a|U|1234
9GHH|1|a|A|1235
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain k
- Small ribosomal subunit protein uS10
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14 type Z
- Chain t
- 30S ribosomal protein S19
Coloring options: