J3_9GHH_031

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

9GHH|1|a|U|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHH_031 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1157

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9GHH|1|a|C|999
9GHH|1|a|U|1000
9GHH|1|a|U|1001
9GHH|1|a|G|1002
9GHH|1|a|A|1003
9GHH|1|a|C|1004
9GHH|1|a|A|1005
9GHH|1|a|U|1006
*
9GHH|1|a|A|1055
9GHH|1|a|C|1056
9GHH|1|a|A|1057
9GHH|1|a|G|1058
*
9GHH|1|a|C|1220
9GHH|1|a|U|1221
9GHH|1|a|U|1222
9GHH|1|a|A|1223
9GHH|1|a|U|1224
9GHH|1|a|G|1225

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S14 type Z