J3_9GMO_002

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9GMO|1|A|A|218, 9GMO|1|A|G|219, 9GMO|1|A|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GMO|1|A|C|196
9GMO|1|A|A|197
9GMO|1|A|A|198
9GMO|1|A|G|199
*
9GMO|1|A|C|215
9GMO|1|A|C|216
9GMO|1|A|C|217
9GMO|1|A|A|218
9GMO|1|A|G|219
9GMO|1|A|C|220
9GMO|1|A|C|221
9GMO|1|A|C|222
9GMO|1|A|G|223
9GMO|1|A|U|224
9GMO|1|A|G|225
9GMO|1|A|G|226
9GMO|1|A|A|227
9GMO|1|A|C|228
*
9GMO|1|A|G|240
9GMO|1|A|G|241
9GMO|1|A|U|242
9GMO|1|A|A|243
9GMO|1|A|G|244

Current chains

Chain A

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L4

Chain S

Large ribosomal subunit protein uL24