3D structure

PDB id
9GMO (explore in PDB, NAKB, or RNA 3D Hub)
Description
eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Experimental method
ELECTRON MICROSCOPY
Resolution
2.59 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
9GMO|1|A|U|354, 9GMO|1|A|A|362, 9GMO|1|C|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GMO_003 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.068
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07616.1
Basepair signature
cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Number of instances in this motif group
10

Unit IDs

9GMO|1|A|C|351
9GMO|1|A|G|352
9GMO|1|A|A|353
9GMO|1|A|U|354
9GMO|1|A|A|355
9GMO|1|A|G|356
9GMO|1|A|U|357
9GMO|1|A|C|358
9GMO|1|A|A|359
9GMO|1|A|A|360
9GMO|1|A|C|361
9GMO|1|A|A|362
9GMO|1|A|A|363
9GMO|1|A|G|364
9GMO|1|A|U|365
9GMO|1|A|A|366
9GMO|1|A|C|367
*
9GMO|1|A|G|374
9GMO|1|A|G|375
9GMO|1|A|A|376
9GMO|1|A|A|377
9GMO|1|A|A|378
9GMO|1|A|G|379
*
9GMO|1|C|C|21
9GMO|1|C|U|22
9GMO|1|C|C|23
9GMO|1|C|G|24

Current chains

Chain A
28S rRNA
Chain C
5.8S rRNA

Nearby chains

Chain 0
Cytoplasmic 60S subunit biogenesis factor ZNF622
Chain F
60S ribosomal protein L4
Chain S
Large ribosomal subunit protein uL24
Chain d
60S ribosomal protein L37
Chain f
60S ribosomal protein L39

Coloring options:


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