J3_9GMO_003
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9GMO|1|A|U|354, 9GMO|1|A|A|362, 9GMO|1|C|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GMO_003 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.068
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9GMO|1|A|C|351
9GMO|1|A|G|352
9GMO|1|A|A|353
9GMO|1|A|U|354
9GMO|1|A|A|355
9GMO|1|A|G|356
9GMO|1|A|U|357
9GMO|1|A|C|358
9GMO|1|A|A|359
9GMO|1|A|A|360
9GMO|1|A|C|361
9GMO|1|A|A|362
9GMO|1|A|A|363
9GMO|1|A|G|364
9GMO|1|A|U|365
9GMO|1|A|A|366
9GMO|1|A|C|367
*
9GMO|1|A|G|374
9GMO|1|A|G|375
9GMO|1|A|A|376
9GMO|1|A|A|377
9GMO|1|A|A|378
9GMO|1|A|G|379
*
9GMO|1|C|C|21
9GMO|1|C|U|22
9GMO|1|C|C|23
9GMO|1|C|G|24
Current chains
- Chain A
- 28S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain 0
- Cytoplasmic 60S subunit biogenesis factor ZNF622
- Chain F
- 60S ribosomal protein L4
- Chain S
- Large ribosomal subunit protein uL24
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
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