J3_9GMO_013
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 9GMO|1|A|C|2470, 9GMO|1|A|A|2472, 9GMO|1|A|G|2475, 9GMO|1|A|G|2503, 9GMO|1|A|C|2504
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GMO_013 not in the Motif Atlas
- Homologous match to J3_8CRE_016
- Geometric discrepancy: 0.594
- The information below is about J3_8CRE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_65403.1
- Basepair signature
- cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
9GMO|1|A|A|2451
9GMO|1|A|G|2452
9GMO|1|A|A|2453
9GMO|1|A|U|2454
9GMO|1|A|G|2455
9GMO|1|A|G|2456
*
9GMO|1|A|C|2465
9GMO|1|A|G|2466
9GMO|1|A|U|2467
9GMO|1|A|U|2468
9GMO|1|A|C|2469
9GMO|1|A|C|2470
9GMO|1|A|G|2471
9GMO|1|A|A|2472
9GMO|1|A|A|2473
9GMO|1|A|G|2474
9GMO|1|A|G|2475
9GMO|1|A|G|2476
*
9GMO|1|A|C|2501
9GMO|1|A|G|2502
9GMO|1|A|G|2503
9GMO|1|A|C|2504
9GMO|1|A|C|2505
9GMO|1|A|G|2506
9GMO|1|A|A|2507
9GMO|1|A|PSU|2508
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L8
- Chain R
- 60S ribosomal protein L23a
- Chain d
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L15
- Chain n
- 60S ribosomal protein L7a
Coloring options: