3D structure

PDB id
9GR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-TEC complex in delivery state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.17 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
9GR1|1|a|U|34, 9GR1|1|a|U|448, 9GR1|1|a|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GR1_020 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0336
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

9GR1|1|a|C|32
9GR1|1|a|C|33
9GR1|1|a|U|34
9GR1|1|a|G|35
*
9GR1|1|a|C|445
9GR1|1|a|G|446
9GR1|1|a|A|447
9GR1|1|a|U|448
9GR1|1|a|A|449
9GR1|1|a|G|450
9GR1|1|a|U|451
9GR1|1|a|G|452
9GR1|1|a|A|453
9GR1|1|a|A|454
9GR1|1|a|C|455
9GR1|1|a|C|456
9GR1|1|a|A|457
9GR1|1|a|G|458
9GR1|1|a|U|459
9GR1|1|a|A|460
9GR1|1|a|C|461
*
9GR1|1|a|G|468
9GR1|1|a|G|469
9GR1|1|a|A|470
9GR1|1|a|A|471
9GR1|1|a|A|472
9GR1|1|a|G|473

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain e
50S ribosomal protein L4
Chain p
50S ribosomal protein L20
Chain s
50S ribosomal protein L23

Coloring options:


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